Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
Paired design
•
reset
2
votes
5
replies
1.6k
views
DESeq2 problem with outlier replacement in paired multi-factor design
deseq2
differential gene expression
multiple factor design
paired design
7.3 years ago
gregory.l.stone
▴ 10
3
votes
4
replies
1.1k
views
Complicated unbalanced block DOE with partially paired samples and analysis
limma
complex-design
paired design
updated 6.1 years ago by
Aaron Lun
★ 28k • written 6.1 years ago by
ML18
▴ 10
4
votes
3
replies
1.1k
views
Differential profile for only one normal - tumor pair
edger
degs
paired design
updated 5.8 years ago by
Gordon Smyth
50k • written 5.8 years ago by
takumima
▴ 10
3
votes
3
replies
1.4k
views
Difficulties with probable batch effect in paired blocked (treatment and placebo) experiment
deseq2
edger
limma
batch effect
paired design
6.1 years ago
Vladimir Krasikov
▴ 90
2
votes
3
replies
856
views
Drug response pre- and post-treatment between timepoints across conditions
RNA-seq
Paired design
Timecourse
Diagnosis
Covariates
updated 4.1 years ago by
Kevin Blighe
★ 3.9k • written 4.1 years ago by
ibrahim.akkouh
• 0
1
vote
3
replies
1.0k
views
Setting up the design for paired analysis
edger
limma
paired design
5.4 years ago • updated 5.3 years ago
candida.vaz
▴ 50
2
votes
2
replies
1.3k
views
EdgeR User Guide: use of glmLRT vs glmQLF in oral carcinoma Case Study
edger
design matrix
glmlrt()
glmQFTest()
paired design
5.5 years ago
oakhamwolf
• 0
7 results • Page
1 of 1
Recent ...
Replies
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…
Comment: Differences in differential analysis methods for RNA-Seq
by
james.zhang20
• 0
Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…
Answer: Deseq2 and Normalization of RNA sequencing data
by
ATpoint
★ 4.1k
There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
Awards
• All
Popular Question
to
rohitsatyam102
▴ 20
Popular Question
to
shepherl
3.8k
Popular Question
to
siajunren
• 0
Scholar
to
Rory Stark
★ 5.2k
Popular Question
to
tangming2005
▴ 190
Locations
• All
United States,
just now
Melbourne, Australia,
3 minutes ago
United States,
4 minutes ago
France,
5 minutes ago
Sweden,
8 minutes ago
Traffic: 884 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6